The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1650
Genome IDAE000666
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothermobacter thermautotrophicus str. Delta H [AE000666]
Start position on genome 719951
End posion on genome 720024
Amino Acid Gly
Anticodon GCC
Upstream region at tRNA start position 
cctacgaatt
tRNA gene sequence 
GCGGCGTTAGTCCAGCCTGGTTAAGACACTGGCCTGCCACGCCAGCGACCCGGGTTCAAA
TCCCGGACGCCGCAtag
Downstream region at tRNA end position 
cggttgtagt
Secondary structure (Cloverleaf model)
>At1650	Gly	GCC
                   t      Atag cggttgtagt
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     G - C
                     T - A          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         C C T G       C C G G G     C
  G           | | |                 T T
  G         A G A C
    T T A          A     CGAC
                    C - G
                    T - A
                    G - C
                    G - C
                    C - G
                  C       C
                  T       A
                    G C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCGTTAGTCCAGCCTGGTTAAGACACTGGCCTGCCACGCCAGCGACCCGGGTTCAAA
TCCCGGACGCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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