The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1651
Genome IDAE000666
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothermobacter thermautotrophicus str. Delta H [AE000666]
Start position on genome 720027
End posion on genome 720100
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
acgccgcata
tRNA gene sequence 
GCGGTTGTAGTCTAGTCTGGTTAGGACTCGGGCCTTCCAAGCCCGCGACCCGGGTTCAAA
TCCCGGCAACCGCAtat
Downstream region at tRNA end position 
aaactgcttc
Secondary structure (Cloverleaf model)
>At1651	Gly	TCC
                   a      Atat aaactgcttc
                     G - C
                     C - G
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C          T A
                    T     G G C C C     A
    C T G A        A      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | |                 T T
  G         G G A C
    T T A          T     CGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGTTGTAGTCTAGTCTGGTTAGGACTCGGGCCTTCCAAGCCCGCGACCCGGGTTCAAA
TCCCGGCAACCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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