The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1652
Genome IDAE000666
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothermobacter thermautotrophicus str. Delta H [AE000666]
Start position on genome 749556
End posion on genome 749627
Amino Acid Val
Anticodon GAC
Upstream region at tRNA start position 
gaaggaacac
tRNA gene sequence 
GGGCCGGTGGTCTAGGGGTATGATACCTCCCTGACACGGAGGTGATCACGAGTTCGAATC
TCGTCCGGCCCAtca
Downstream region at tRNA end position 
tgccgtggta
Secondary structure (Cloverleaf model)
>At1652	Val	GAC
                   c      Atca tgccgtggta
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     T G C T C     A
        G A        G      | | | | |     G
      G     T C T G       A C G A G     C
      G       | | +                 T T
      G     T G A T
        T A        A     TGATC
                    C - G
                    C - G
                    T - A
                    C - G
                    C - G
                  C       C
                  T       A
                    G A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTGGTCTAGGGGTATGATACCTCCCTGACACGGAGGTGATCACGAGTTCGAATC
TCGTCCGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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