The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1654
Genome IDAE000666
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothermobacter thermautotrophicus str. Delta H [AE000666]
Start position on genome 863800
End posion on genome 863871
Amino Acid Gln
Anticodon CTG
Upstream region at tRNA start position 
ttttaagcat
tRNA gene sequence 
AGTCCCGTGGGGTAATGGCAATCCTGATGGACTCTGGATCCATCGATAGCGGTTCGACTC
CGCTCGGGACTAtcc
Downstream region at tRNA end position 
ccccataaca
Secondary structure (Cloverleaf model)
>At1654	Gln	CTG
                   t      Atcc ccccataaca
                     A - T
                     G - C
                     T - A
                     C - G
                     C - G
                     C - G
                     G - C          T C
                    T     T C G C C     A
      T A A        G      | | | | |     G
    G       T G G G       A G C G G     C
    G         | | +                 T T
    C       T C C T
      A A          G     CGAT
                    A - T
                    T - A
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    C T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGTCCCGTGGGGTAATGGCAATCCTGATGGACTCTGGATCCATCGATAGCGGTTCGACTC
CGCTCGGGACTA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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