The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1656
Genome IDAE000666
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothermobacter thermautotrophicus str. Delta H [AE000666]
Start position on genome 953939
End posion on genome 954012
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position
cattggaaat
tRNA gene sequence
GCCTCGGTAGCTCAGTCTGGTGGAGCGCGAGACTTGTAATCTCGTGGTCGCGGGTTCAAT
TCCCGTCCGGGGCTtca
Downstream region at tRNA end position
aaaagggacc
Secondary structure (Cloverleaf model)
>At1656	Thr	TGT
                   t      Ttca aaaagggacc
                     G - C
                     C - G
                     C - G
                     T + G
                     C - G
                     G - C
                     G - C          T T
                    T     T G C C C     A
      T G A        A      + | | | |     A
    C       C T C G       G C G G G     C
    T       | | | |                 T T
    G       G A G C
      G T G        G     TGGTC
                    C - G
                    G - C
                    A - T
                    G - C
                    A - T
                  C       A
                  T       A
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTCGGTAGCTCAGTCTGGTGGAGCGCGAGACTTGTAATCTCGTGGTCGCGGGTTCAAT
TCCCGTCCGGGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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