The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1660
Genome IDAE000666
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothermobacter thermautotrophicus str. Delta H [AE000666]
Start position on genome 954430
End posion on genome 954503
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
cgtttcctga
tRNA gene sequence 
GGGCCCGTAGCTCAGTCTGGCAGAGCGCTTGGCTTTTAACCAAGTGGTCGCGGGTTCAAT
TCCCGTCGGGCCCGcta
Downstream region at tRNA end position 
tctaatttta
Secondary structure (Cloverleaf model)
>At1660	Lys	TTT
                   a      Gcta tctaatttta
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T T
                    T     T G C C C     A
      T G A        A      + | | | |     A
    C       C T C G       G C G G G     C
    T       | | | |                 T T
    G       G A G C
      G C A        G     TGGTC
                    C - G
                    T - A
                    T - A
                    G - C
                    G - C
                  C       A
                  T       A
                    T T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGTCTGGCAGAGCGCTTGGCTTTTAACCAAGTGGTCGCGGGTTCAAT
TCCCGTCGGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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