The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1661
Genome IDAE000666
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothermobacter thermautotrophicus str. Delta H [AE000666]
Start position on genome 967977
End posion on genome 968061
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
atctgatact
tRNA gene sequence 
GCCGGGATAGCCTAGCCAGGTAAGGCGCGGGACTTGAGATCCCGTGGAGATTCTCTCCGC
CTGGGTTCAAATCCCAGTCCCGGCGctt
Downstream region at tRNA end position 
aaaaaaactt
Secondary structure (Cloverleaf model)
>At1661	Ser	TGA
                   t      Gctt aaaaaaactt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     G A C C C     A
      C G A        A      | | | | |     A
    C       T C C G       C T G G G     C
    A       | | | |                 T T
    G       A G G C
      G T A        G     TGGAGATTCTCTCCGC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGATAGCCTAGCCAGGTAAGGCGCGGGACTTGAGATCCCGTGGAGATTCTCTCCGC
CTGGGTTCAAATCCCAGTCCCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK