The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1668
Genome IDAE000666
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothermobacter thermautotrophicus str. Delta H [AE000666]
Start position on genome 1387608
End posion on genome 1387679
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
ctctcatttt
tRNA gene sequence 
GCCCTGATAGTGTAGCGGATATCACGTAGGACTGCGGATCCTATTACCCGGGTTCAAGTC
CCGGTCAGGGCActc
Downstream region at tRNA end position 
accttcacat
Secondary structure (Cloverleaf model)
>At1668	Arg	GCG
                   t      Actc accttcacat
                     G - C
                     C - G
                     C - G
                     C - G
                     T - A
                     G - C
                     A - T          T G
                    T     G G C C C     A
      C G A        A      | | | | |     A
    G       T G T G       C C G G G     C
    G         | | |                 T T
    A       T C A C
      T A          G     TTAC
                    T - A
                    A - T
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCTGATAGTGTAGCGGATATCACGTAGGACTGCGGATCCTATTACCCGGGTTCAAGTC
CCGGTCAGGGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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