The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1674
Genome IDAE000666
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothermobacter thermautotrophicus str. Delta H [AE000666]
Start position on genome 679026
End posion on genome 678954
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position
attacttcag
tRNA gene sequence
GCCTCGGTAGCTTAGGTGGGAGAGCGCGGGATTCGTAATCCCGAGGTCGCGGGTTCAATC
CCCGCCCGGGGCTctt
Downstream region at tRNA end position
attttatcac
Secondary structure (Cloverleaf model)
>At1674	Thr	CGT
                   g      Tctt attttatcac
                     G - C
                     C - G
                     C - G
                     T + G
                     C - G
                     G - C
                     G - C          C T
                    T     C G C C C     A
      G G A        A      | | | | |     A
    T       T T C G       G C G G G     C
    G       + | | |                 T T
    G       G A G C
      G A          G     AGGTC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  T       A
                  T       A
                    C G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTCGGTAGCTTAGGTGGGAGAGCGCGGGATTCGTAATCCCGAGGTCGCGGGTTCAATC
CCCGCCCGGGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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