The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1676
Genome IDAE000666
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothermobacter thermautotrophicus str. Delta H [AE000666]
Start position on genome 1159163
End posion on genome 1159092
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
gttactttat
tRNA gene sequence 
GCCAAGGTAGCTTAGTGGCGAAGCGGTGGACTGCAGATCCATTACACGTGAGTTCAAATC
TCACCCTTGGCTtca
Downstream region at tRNA end position 
aacattttat
Secondary structure (Cloverleaf model)
>At1676	Cys	GCA
                   t      Ttca aacattttat
                     G - C
                     C - G
                     C - G
                     A - T
                     A - T
                     G - C
                     G - C          T A
                    T     C A C T C     A
        G A        A      | | | | |     A
      T     T T C G       G T G A G     C
      G     | | | |                 T T
      G     A A G C
        C G        G     TACAC
                    G + T
                    T - A
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCAAGGTAGCTTAGTGGCGAAGCGGTGGACTGCAGATCCATTACACGTGAGTTCAAATC
TCACCCTTGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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