The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1677
Genome IDAE000666
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothermobacter thermautotrophicus str. Delta H [AE000666]
Start position on genome 1160107
End posion on genome 1160032
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
tgattcaatt
tRNA gene sequence 
GCCGGGGTGGGGTAGGCGGTTATCCTTCGGGACTGTGGATCCCGCGACTCGGGTTCAAAT
CTCGGCCCCGGCCCCA
Downstream region at tRNA end position 
ttctcatcac
Secondary structure (Cloverleaf model)
>At1677	His	GTG
                   t      CCCA ttctcatcac
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G G C T C     A
      G G A        G      + | | + |     A
    C       T G G G       T C G G G     C
    G         | | +                 T T
    G       T C C T
      T T A        T     CGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGGGGTAGGCGGTTATCCTTCGGGACTGTGGATCCCGCGACTCGGGTTCAAAT
CTCGGCCCCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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