The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1684
Genome IDAE000666
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothermobacter thermautotrophicus str. Delta H [AE000666]
Start position on genome 1525704
End posion on genome 1525631
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
ttcttaatat
tRNA gene sequence 
GGGCCCGTGGCTCAGGTGGTTAGAGCGCACGGCTGATAACCGTGAGGCCCTGGGTTCGAA
TCCCAGCGGGCCCAtcc
Downstream region at tRNA end position 
acctttttat
Secondary structure (Cloverleaf model)
>At1684	Ile	GAT
                   t      Atcc acctttttat
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G A C C C     A
      G G A        G      | | | | |     G
    T       C T C G       C T G G G     C
    G       | | | |                 T T
    G       G A G C
      T T A        G     AGGCC
                    C - G
                    A - T
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTGGCTCAGGTGGTTAGAGCGCACGGCTGATAACCGTGAGGCCCTGGGTTCGAA
TCCCAGCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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