The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1686
Genome IDCR936257
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNatronomonas pharaonis DSM 2160 Gabara [CR936257]
Start position on genome 164329
End posion on genome 164401
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
gggtgcgagg
tRNA gene sequence 
GCCGCCGTAGCTCAGCTGGTAGAGCACCACGCTGTTAACGTGGTTGTCCCAGGTTCGAGA
CCTGGCGGCGGCGctt
Downstream region at tRNA end position 
ttccttctga
Secondary structure (Cloverleaf model)
>At1686	Asn	GTT
                   g      Gctt ttccttctga
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          A G
                    T     G G T C C     A
      C G A        A      | | | | |     G
    T       C T C G       C C A G G     C
    G       | | | |                 T T
    G       G A G C
      T A          A     TTGTC
                    C - G
                    C - G
                    A - T
                    C - G
                    G - C
                  C       A
                  T       A
                    G T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGCTCAGCTGGTAGAGCACCACGCTGTTAACGTGGTTGTCCCAGGTTCGAGA
CCTGGCGGCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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