The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1688
Genome IDCR936257
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNatronomonas pharaonis DSM 2160 Gabara [CR936257]
Start position on genome 289194
End posion on genome 289275
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
tgtagactga
tRNA gene sequence 
GCCAGGATGGCCGAACGGTAAGGCGCACGCCTGGAAAGCGTGTTCCCTTCCGGGATTCTG
GGTTCAAATCCCAGTCCTGGCGctt
Downstream region at tRNA end position 
cttcccgttg
Secondary structure (Cloverleaf model)
>At1688	Ser	GGA
                   a      Gctt cttcccgttg
                     G - C
                     C - G
                     C - G
                     A - T
                     G - C
                     G - C
                     A - T          T A
                    T     G A C C C     A
        A A        G      | | | | |     A
      C     G C C G       C T G G G     C
      G       | | |                 T T
      G     A G G C
        T A        G     TTCCCTTCCGGGATT
                    C - G
                    A - T
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    G G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCAGGATGGCCGAACGGTAAGGCGCACGCCTGGAAAGCGTGTTCCCTTCCGGGATTCTG
GGTTCAAATCCCAGTCCTGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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