The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1689
Genome IDCR936257
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNatronomonas pharaonis DSM 2160 Gabara [CR936257]
Start position on genome 434096
End posion on genome 434200
Amino Acid Arg
Anticodon TCT
Upstream region at tRNA start position
cagggagtga
tRNA gene sequence
GGGCACGTAGCTCAGCCCGGATAGAGCGTCGGACTTCTAATCCGACGGTCGTGGGTTCGA
ATCCCACCGTGCCCGtga
Downstream region at tRNA end position
agccgctgaa
Secondary structure (Cloverleaf model)
>At1689	Arg	TCT
                   a      Gtga agccgctgaa
                     G - C
                     G - C
                     G - C
                     C - G
                     A - T
                     C - G
                     G - C          T A
                    T     C A C C C     A
    C C G A        A      | | | | |     G
  C         C T C G       G T G G G     C
  G         | | | |                 T T
  G         G A G C
    A T A          G     CGGTC
                    T - A
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A *
                    T C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCACGTAGCTCAGCCCGGATAGAGCGTCGGACTTCTAactgcgccggacgttccggtg
tgggaagacATCCGACGGTCGTGGGTTCGAATCCCACCGTGCCCG
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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