The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1690
Genome IDCR936257
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNatronomonas pharaonis DSM 2160 Gabara [CR936257]
Start position on genome 523044
End posion on genome 523116
Amino Acid Gln
Anticodon CTG
Upstream region at tRNA start position 
ctacgaatgc
tRNA gene sequence 
AGTCCCGTGGGGTAGCGGCCAATCCTTCGAGCTTCTGGGGCTCGAGACGGAAGTTCGAAT
CTTCCCGGGACTActt
Downstream region at tRNA end position 
ctctccgaca
Secondary structure (Cloverleaf model)
>At1690	Gln	CTG
                   c      Actt ctctccgaca
                     A - T
                     G - C
                     T - A
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C C T T C     A
      C G A        G      | | | | |     G
    G       T G G G       G G A A G     C
    G         | | +                 T T
    C       T C C T
      C A A        T     AGAC
                    C - G
                    G - C
                    A - T
                    G - C
                    C - G
                  T       G
                  T       G
                    C T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGTCCCGTGGGGTAGCGGCCAATCCTTCGAGCTTCTGGGGCTCGAGACGGAAGTTCGAAT
CTTCCCGGGACTA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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