The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1692
Genome IDCR936257
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNatronomonas pharaonis DSM 2160 Gabara [CR936257]
Start position on genome 916898
End posion on genome 916970
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
tcgaatgcgc
tRNA gene sequence 
GCCGGTGTAGCTCAGCTGGCAGAGCGAATCCTTCGTAAGGATTAGGCCGAGGGTTCAAAT
CCCTCCACCGGCTctt
Downstream region at tRNA end position 
attaccaagt
Secondary structure (Cloverleaf model)
>At1692	Thr	CGT
                   c      Tctt attaccaagt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     T - A
                     G - C          T A
                    T     C T C C C     A
      C G A        A      | | | | |     A
    T       C T C G       G A G G G     C
    G       | | | |                 T T
    G       G A G C
      C A          G     AGGCC
                    A - T
                    A - T
                    T - A
                    C - G
                    C - G
                  T       A
                  T       A
                    C G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGTGTAGCTCAGCTGGCAGAGCGAATCCTTCGTAAGGATTAGGCCGAGGGTTCAAAT
CCCTCCACCGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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