The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1695
Genome IDCR936257
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNatronomonas pharaonis DSM 2160 Gabara [CR936257]
Start position on genome 1364233
End posion on genome 1364316
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
acacacgcga
tRNA gene sequence 
GTCGTGGTAGCCAAGCATGGCCCAAGGCGCAGGGTTGCTAACTCTGTGGCGCAAGCCTCC
GGGGTTCAAATCCCCGCCACGACGcta
Downstream region at tRNA end position 
accaaccaca
Secondary structure (Cloverleaf model)
>At1695	Ser	GCT
                   a      Gcta accaaccaca
                     G - C
                     T - A
                     C - G
                     G - C
                     T - A
                     G - C
                     G - C          T A
                    T     G C C C C     A
    A C G A        A      | | | | |     A
  T         A C C G       C G G G G     C
  G           | | |                 T T
  G         A G G C
    C C C A        G     TGGCGCAAGCCTC
                    C - G
                    A - T
                    G - C
                    G + T
                    G - C
                  T       A
                  T       A
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GTCGTGGTAGCCAAGCATGGCCCAAGGCGCAGGGTTGCTAACTCTGTGGCGCAAGCCTCC
GGGGTTCAAATCCCCGCCACGACG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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