The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1697
Genome IDCR936257
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNatronomonas pharaonis DSM 2160 Gabara [CR936257]
Start position on genome 1496540
End posion on genome 1496610
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
gttggattgc
tRNA gene sequence 
GCGCCGATGGTCTAGTGGTAGGACCTGAGCCTTCCAAGCTCATGGCCCGGGTTCAAATCC
CGGTCGGCGCActc
Downstream region at tRNA end position 
ccagcggtcg
Secondary structure (Cloverleaf model)
>At1697	Gly	TCC
                   c      Actc ccagcggtcg
                     G - C
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T          T A
                    T     G G C C C     A
        G A        G      | | | | |     A
      T     T C T G       C C G G G     C
      G     + | | |                 T T
      G     G G A C
        T A        C     TGGC
                    T - A
                    G - C
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGCCGATGGTCTAGTGGTAGGACCTGAGCCTTCCAAGCTCATGGCCCGGGTTCAAATCC
CGGTCGGCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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