The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1701
Genome IDCR936257
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNatronomonas pharaonis DSM 2160 Gabara [CR936257]
Start position on genome 1844679
End posion on genome 1844750
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
tggagtgcct
tRNA gene sequence 
GCCTGGGTAGCTTAGCGGTAAAGCGCGTCCTTGGTAAGGACGAGAGCCCGGGTTCAAATC
CCGGCCTAGGCTtca
Downstream region at tRNA end position 
gcccttttcc
Secondary structure (Cloverleaf model)
>At1701	Thr	GGT
                   t      Ttca gcccttttcc
                     G - C
                     C - G
                     C - G
                     T - A
                     G + T
                     G - C
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     A
      C     T T C G       C C G G G     C
      G     | | | |                 T T
      G     A A G C
        T A        G     AGAGC
                    C - G
                    G - C
                    T - A
                    C - G
                    C - G
                  T       A
                  T       A
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTGGGTAGCTTAGCGGTAAAGCGCGTCCTTGGTAAGGACGAGAGCCCGGGTTCAAATC
CCGGCCTAGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK