The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1707
Genome IDCR936257
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNatronomonas pharaonis DSM 2160 Gabara [CR936257]
Start position on genome 153907
End posion on genome 153834
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
tcacgtgcga
tRNA gene sequence 
GCCGCCTTAGCTCAGACTGGGAGAGCACTCGACTGAAGATCGAGCTGTCCCCGGTTCAAA
TCCGGGAGGCGGCAtgg
Downstream region at tRNA end position 
ttgttttact
Secondary structure (Cloverleaf model)
>At1707	Phe	GAA
                   a      Atgg ttgttttact
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     T - A          T A
                    T     G G G C C     A
      A G A        A      | | | | |     A
    C       C T C G       C C C G G     C
    T       | | | |                 T T
    G       G A G C
      G G A        A     CTGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    A - T
                  C       A
                  T       G
                    G A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCTTAGCTCAGACTGGGAGAGCACTCGACTGAAGATCGAGCTGTCCCCGGTTCAAA
TCCGGGAGGCGGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK