The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1708
Genome IDCR936257
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNatronomonas pharaonis DSM 2160 Gabara [CR936257]
Start position on genome 159713
End posion on genome 159641
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
gtgtgagtga
tRNA gene sequence 
GTCCGGGTAGGGTAGTGGACTATCCTCTTGGCTTGCGGAGCCAGGGACCGGAGTTCAAAT
CTCCGTCCGGACGttc
Downstream region at tRNA end position 
ttcactgaca
Secondary structure (Cloverleaf model)
>At1708	Arg	GCG
                   a      Gttc ttcactgaca
                     G - C
                     T - A
                     C - G
                     C - G
                     G - C
                     G - C
                     G + T          T A
                    T     G C C T C     A
      T G A        A      | | | | |     A
    G       T G G G       C G G A G     C
    G         | | +                 T T
    A       T C C T
      C T A        C     GGAC
                    T + G
                    T - A
                    G - C
                    G - C
                    C - G
                  T       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GTCCGGGTAGGGTAGTGGACTATCCTCTTGGCTTGCGGAGCCAGGGACCGGAGTTCAAAT
CTCCGTCCGGACG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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