The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1711
Genome IDCR936257
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNatronomonas pharaonis DSM 2160 Gabara [CR936257]
Start position on genome 327596
End posion on genome 327512
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
gtactcgtga
tRNA gene sequence 
GCCGAGGTAGCCTAGCCCGGCCAAGGCGGTTGCTTCGAGAGCAACTGTCCGAGAGGACTC
GTGAGTTCAAATCTCACCCTCGGCGctc
Downstream region at tRNA end position 
gctgctttcg
Secondary structure (Cloverleaf model)
>At1711	Ser	CGA
                   a      Gctc gctgctttcg
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C A C T C     A
    C C G A        A      | | | | |     A
  C         T C C G       G T G A G     C
  G         | | | |                 T T
  G         A G G C
    C C A          G     TGTCCGAGAGGACTC
                    G - C
                    T - A
                    T - A
                    G - C
                    C - G
                  T       A
                  T       G
                    C G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGAGGTAGCCTAGCCCGGCCAAGGCGGTTGCTTCGAGAGCAACTGTCCGAGAGGACTC
GTGAGTTCAAATCTCACCCTCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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