The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1716
Genome IDCR936257
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNatronomonas pharaonis DSM 2160 Gabara [CR936257]
Start position on genome 956469
End posion on genome 956395
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
cgccaaccta
tRNA gene sequence 
GGGCCAATAGCTCAGCTAGGTATGAGCGCTCGGCTGATAACCGGGAGGTCCTCGGTTCAA
ATCCGAGTTGGCCCActc
Downstream region at tRNA end position 
ggtttccaaa
Secondary structure (Cloverleaf model)
>At1716	Ile	GAT
                   a      Actc ggtttccaaa
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     A - T
                     A - T          T A
                    T     G A G C C     A
    T C G A        A      | | | | |     A
  A         C T C G       C T C G G     C
  G         | | | |                 T T
  G         G A G C
    T A T          G     AGGTC
                    C - G
                    T + G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCAATAGCTCAGCTAGGTATGAGCGCTCGGCTGATAACCGGGAGGTCCTCGGTTCAA
ATCCGAGTTGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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