The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1717
Genome IDCR936257
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNatronomonas pharaonis DSM 2160 Gabara [CR936257]
Start position on genome 1240239
End posion on genome 1240165
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
ttctttcgct
tRNA gene sequence 
GGGTCGGTGGTCTAGGTCGGTTATGACACCTCCTTCACACGGAGGAAGCCGGCGGTTCAA
ATCCGCCCCGACCCAttc
Downstream region at tRNA end position 
tgcgatgaac
Secondary structure (Cloverleaf model)
>At1717	Val	CAC
                   t      Attc tgcgatgaac
                     G - C
                     G - C
                     G - C
                     T - A
                     C - G
                     G - C
                     G - C          T A
                    T     C C G C C     A
    T G G A        G      | | | | |     A
  C         T C T G       G G C G G     C
  G           | | |                 T T
  G         T G A C
    T T A          A     AAGCC
                    C - G
                    C - G
                    T - A
                    C - G
                    C - G
                  T       C
                  T       A
                    C A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGTCGGTGGTCTAGGTCGGTTATGACACCTCCTTCACACGGAGGAAGCCGGCGGTTCAA
ATCCGCCCCGACCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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