The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1718
Genome IDCR936257
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNatronomonas pharaonis DSM 2160 Gabara [CR936257]
Start position on genome 1288028
End posion on genome 1287945
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
ggcaacgcgt
tRNA gene sequence 
GCGAGGGTAGCCAAGCCTGGAAACGGCGGCGGACTCAAGATCCGCTCCTGTAGAGGTCCG
TGGGTTCAAATCCCTCCCCTCGCAtga
Downstream region at tRNA end position 
gcgtgccaca
Secondary structure (Cloverleaf model)
>At1718	Leu	CAA
                   t      Atga gcgtgccaca
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    T     C T C C C     A
    C C G A        A      |   | | |     A
  T         A C C G       G T G G G     C
  G           | | |                 T T
  G         C G G C
    A A A          G     TCCTGTAGAGGTCC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    C A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGGTAGCCAAGCCTGGAAACGGCGGCGGACTCAAGATCCGCTCCTGTAGAGGTCCG
TGGGTTCAAATCCCTCCCCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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