The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1719
Genome IDCR936257
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNatronomonas pharaonis DSM 2160 Gabara [CR936257]
Start position on genome 1312459
End posion on genome 1312388
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
ttgcgttcga
tRNA gene sequence 
GGGCTCGTAGATCAGCGGTAGATCATCCCCCTGGCACGGGGAAGGCCCCGGGTTCAAATC
CCGGCGAGTCCAttc
Downstream region at tRNA end position 
gtctcgcttc
Secondary structure (Cloverleaf model)
>At1719	Ala	GGC
                   a      Attc gtctcgcttc
                     G - C
                     G - C
                     G + T
                     C - G
                     T - A
                     C - G
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     A
      C     C T A G       C C G G G     C
      G     | | | |                 T T
      G     G A T C
        T A        A     AGGCC
                    T - A
                    C - G
                    C - G
                    C - G
                    C - G
                  C       C
                  T       A
                    G G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCGTAGATCAGCGGTAGATCATCCCCCTGGCACGGGGAAGGCCCCGGGTTCAAATC
CCGGCGAGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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