The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1720
Genome IDCR936257
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNatronomonas pharaonis DSM 2160 Gabara [CR936257]
Start position on genome 1484046
End posion on genome 1483965
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
cacactgccc
tRNA gene sequence 
GGTGGGATGGCAGAGTGGCCCATTGCGTCTGCCTTGAAAGCAGATGGCGCAAGCCTCCTG
GGTTCAAATCCCAGTCCCACCGcat
Downstream region at tRNA end position 
ccttctcctg
Secondary structure (Cloverleaf model)
>At1720	Ser	TGA
                   c      Gcat ccttctcctg
                     G - C
                     G - C
                     T - A
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     G A C C C     A
      T G A        G      | | | | |     A
    G       G A C G       C T G G G     C
    G       + | | |                 T T
    C       T T G C
      C C A        G     TGGCGCAAGCCTC
                    T - A
                    C - G
                    T - A
                    G - C
                    C - G
                  C       A
                  T       A
                    T G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGTGGGATGGCAGAGTGGCCCATTGCGTCTGCCTTGAAAGCAGATGGCGCAAGCCTCCTG
GGTTCAAATCCCAGTCCCACCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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