The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1721
Genome IDCR936257
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNatronomonas pharaonis DSM 2160 Gabara [CR936257]
Start position on genome 1534343
End posion on genome 1534259
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
tttcaaccgc
tRNA gene sequence 
GCGAGGGTGGCCGAGTCTGGACAAAGGCGGCGGACTTAAGATCCGCTCCTGTAGAGGTCC
GTGGGTTCGAATCCCTCCCCTCGCAtgc
Downstream region at tRNA end position 
gtgtgcgcaa
Secondary structure (Cloverleaf model)
>At1721	Leu	TAA
                   c      Atgc gtgtgcgcaa
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    T     C T C C C     A
    C T G A        G      |   | | |     G
  T         G C C G       G T G G G     C
  G           | | |                 T T
  G         A G G C
    A C A A        G     TCCTGTAGAGGTCC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGGTGGCCGAGTCTGGACAAAGGCGGCGGACTTAAGATCCGCTCCTGTAGAGGTCC
GTGGGTTCGAATCCCTCCCCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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