The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1724
Genome IDCR936257
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNatronomonas pharaonis DSM 2160 Gabara [CR936257]
Start position on genome 1794708
End posion on genome 1794624
Amino Acid Leu
Anticodon TAG
Upstream region at tRNA start position 
gatgggccga
tRNA gene sequence 
GCGCGGGTTGCCGAGCCAGGCCAAAGGCGCAGCGCTTAGGACGCTGTCCCGTAGGGGTCC
GCCGGTTCAAATCCGGTCCCGCGCActg
Downstream region at tRNA end position 
actgagtttt
Secondary structure (Cloverleaf model)
>At1724	Leu	TAG
                   a      Actg actgagtttt
                     G - C
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C          T A
                    T     T G G C C     A
    C C G A        T      + | | | |     A
  A         G C C G       G C C G G     C
  G           | | |                 T T
  G         A G G C
    C C A A        G     TCCCGTAGGGGTCC
                    C - G
                    A - T
                    G - C
                    C - G
                    G - C
                  C       A
                  T       G
                    T A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGCGGGTTGCCGAGCCAGGCCAAAGGCGCAGCGCTTAGGACGCTGTCCCGTAGGGGTCC
GCCGGTTCAAATCCGGTCCCGCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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