The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1725
Genome IDCR936257
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNatronomonas pharaonis DSM 2160 Gabara [CR936257]
Start position on genome 1842170
End posion on genome 1842100
Amino Acid Gly
Anticodon CCC
Upstream region at tRNA start position 
gtttcgctgt
tRNA gene sequence 
GCGCCGTTGGTCCAGTGGTAGGACAGAGCCTTCCCAAGGCTCTAGCCCGGGTTCAATTCC
CGGACGGCGCAtgg
Downstream region at tRNA end position 
ccgtttcggt
Secondary structure (Cloverleaf model)
>At1725	Gly	CCC
                   t      Atgg ccgtttcggt
                     G - C
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C
                     T - A          T T
                    T     G G C C C     A
        G A        G      | | | | |     A
      T     C C T G       C C G G G     C
      G     | | | |                 T T
      G     G G A C
        T A        A     TAGC
                    G - C
                    A - T
                    G - C
                    C - G
                    C - G
                  T       A
                  T       A
                    C C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGCCGTTGGTCCAGTGGTAGGACAGAGCCTTCCCAAGGCTCTAGCCCGGGTTCAATTCC
CGGACGGCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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