The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1726
Genome IDCR936257
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNatronomonas pharaonis DSM 2160 Gabara [CR936257]
Start position on genome 1941912
End posion on genome 1941838
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
tgcagatgtc
tRNA gene sequence 
GCTCGCTTGGTGTAGCCCGGCCAATCATATTGGCCTTTCGAGCCGATGACAGGGGTTCAA
ATCCCCTAGCGAGCAttc
Downstream region at tRNA end position 
tcagaccaca
Secondary structure (Cloverleaf model)
>At1726	Glu	TTC
                   c      Attc tcagaccaca
                     G - C
                     C - G
                     T - A
                     C - G
                     G - C
                     C - G
                     T - A          T A
                    T     T C C C C     A
    C C G A        G      | | | | |     A
  C         T G T G       A G G G G     C
  G           | | +                 T T
  G         T C A T
    C C A A        A     TGAC
                    T - A
                    T + G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCGCTTGGTGTAGCCCGGCCAATCATATTGGCCTTTCGAGCCGATGACAGGGGTTCAA
ATCCCCTAGCGAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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