The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1727
Genome IDCR936257
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNatronomonas pharaonis DSM 2160 Gabara [CR936257]
Start position on genome 2007146
End posion on genome 2007073
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
agacatctgt
tRNA gene sequence 
GCCAGGGGAGCTTGGGTGGTCCAAGCACCCGACTTGTAATCGGGAGTTCGTGGGTTCAAA
TCCCACCCCTGGCTcct
Downstream region at tRNA end position 
ttccttcagt
Secondary structure (Cloverleaf model)
>At1727	Thr	TGT
                   t      Tcct ttccttcagt
                     G - C
                     C - G
                     C - G
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    G     C A C C C     A
      G G G        A      | | | | |     A
    T       T T C G       G T G G G     C
    G       | | | |                 T T
    G       A A G C
      T C C        A     AGTTC
                    C - G
                    C - G
                    C - G
                    G - C
                    A - T
                  C       A
                  T       A
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCAGGGGAGCTTGGGTGGTCCAAGCACCCGACTTGTAATCGGGAGTTCGTGGGTTCAAA
TCCCACCCCTGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK