The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1728
Genome IDCR936257
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNatronomonas pharaonis DSM 2160 Gabara [CR936257]
Start position on genome 2116071
End posion on genome 2115998
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
catcctttct
tRNA gene sequence 
GGGCGTGTGGCCAAGCGGACGACGGCGAGAGGTTCCTAACCTCTAGAGCGCGGGTTCGAA
TCCCGTCACGCCCGtcg
Downstream region at tRNA end position 
tgttcacgaa
Secondary structure (Cloverleaf model)
>At1728	Arg	CCT
                   t      Gtcg tgttcacgaa
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     T - A
                     G - C          T A
                    T     T G C C C     A
      C G A        G      + | | | |     G
    G       A C C G       G C G G G     C
    G         | | |                 T T
    A       C G G C
      C G A        G     AGAGC
                    A - T
                    G - C
                    A - T
                    G - C
                    G - C
                  T       A
                  T       A
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCGTGTGGCCAAGCGGACGACGGCGAGAGGTTCCTAACCTCTAGAGCGCGGGTTCGAA
TCCCGTCACGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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