The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1729
Genome IDCR936257
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNatronomonas pharaonis DSM 2160 Gabara [CR936257]
Start position on genome 2172895
End posion on genome 2172821
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
gaagtggtga
tRNA gene sequence 
GGGCGCTTAGCTCAGTCTGGACAGAGTACTTGGCTTCGGACCAAGCTGTCGCGGGTTCAA
ATCCTGCAGCGCCCAttc
Downstream region at tRNA end position 
gttctccgaa
Secondary structure (Cloverleaf model)
>At1729	Arg	TCG
                   a      Attc gttctccgaa
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     C - G
                     T - A          T A
                    T     C G T C C     A
    C T G A        A      | | + | |     A
  T         C T C G       G C G G G     C
  G         | | | +                 T T
  G         G A G T
    A C A          A     CTGTC
                    C - G
                    T - A
                    T - A
                    G - C
                    G - C
                  C       A
                  T       G
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCGCTTAGCTCAGTCTGGACAGAGTACTTGGCTTCGGACCAAGCTGTCGCGGGTTCAA
ATCCTGCAGCGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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