The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1730
Genome IDCR936257
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNatronomonas pharaonis DSM 2160 Gabara [CR936257]
Start position on genome 2368761
End posion on genome 2368691
Amino Acid Gly
Anticodon GCC
Upstream region at tRNA start position 
atgcgaaggc
tRNA gene sequence 
GCGCTGGTAGTGTAGTGGTATCACGTGACCTTGCCATGGTCACAACCCGAGTTCAAATCT
CGGCCAGCGCAttt
Downstream region at tRNA end position 
ctctactgaa
Secondary structure (Cloverleaf model)
>At1730	Gly	GCC
                   c      Attt ctctactgaa
                     G - C
                     C - G
                     G - C
                     C - G
                     T - A
                     G - C
                     G - C          T A
                    T     G G C T C     A
        G A        A      | | | | |     A
      T     T G T G       C C G A G     C
      G       | | |                 T T
      G     T C A C
        T A        G     CAAC
                    T - A
                    G - C
                    A - T
                    C - G
                    C - G
                  T       T
                  T       A
                    G C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGCTGGTAGTGTAGTGGTATCACGTGACCTTGCCATGGTCACAACCCGAGTTCAAATCT
CGGCCAGCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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