The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1731
Genome IDCR936257
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNatronomonas pharaonis DSM 2160 Gabara [CR936257]
Start position on genome 2500419
End posion on genome 2500349
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
caggtgcgtg
tRNA gene sequence 
TCCGGGTTGGGGTAGTGGTATCCTCCAGCCTTGTGGTGGCTGGGACGTGGGTTCAATTCC
CGCACCCGGACctt
Downstream region at tRNA end position 
ccttccaacg
Secondary structure (Cloverleaf model)
>At1731	His	GTG
                   g      Cctt ccttccaacg
                     T - A
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     T - A          T T
                    T     C G C C C     A
        G A        G      | + | | |     A
      T     T G G G       G T G G G     C
      G       | | +                 T T
      G     T C C T
        T A        C     GGAC
                    C - G
                    A - T
                    G - C
                    C - G
                    C - G
                  T       T
                  T       G
                    G T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
TCCGGGTTGGGGTAGTGGTATCCTCCAGCCTTGTGGTGGCTGGGACGTGGGTTCAATTCC
CGCACCCGGAC
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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