The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1732
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 231309
End posion on genome 231383
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
ctgattttta
tRNA gene sequence 
GCTCCGGTGGTGTAGTCCGGCCAAGCATTCCGGCCTTTCGAGCCGATGACTCGGGTTCAA
ATCCCGACCGGAGCAtaa
Downstream region at tRNA end position 
tactatttta
Secondary structure (Cloverleaf model)
>At1732	Glu	TTC
                   a      Ataa tactatttta
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     A G C C C     A
    C T G A        G      | | | | |     A
  C         T G T G       T C G G G     C
  G         + | | +                 T T
  G         G C A T
    C C A A        T     TGAC
                    C   A
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCCGGTGGTGTAGTCCGGCCAAGCATTCCGGCCTTTCGAGCCGATGACTCGGGTTCAA
ATCCCGACCGGAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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