The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1733
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 256371
End posion on genome 256444
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
atatagaaga
tRNA gene sequence 
GCCCGAGTGGGGTAACTTGGATATCCTGAAGGCCTGCGGAGCCTAAGATCCGGGTTCAAA
TCCCGGCCCGGGCAtaa
Downstream region at tRNA end position 
ataccctatt
Secondary structure (Cloverleaf model)
>At1733	Arg	GCG
                   a      Ataa ataccctatt
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     A   C
                     G - C          T A
                    T     G G C C C     A
    T C A A        G      | | | | |     A
  T         T G G G       C C G G G     C
  G           | | +                 T T
  G         T C C T
    A T A          G     AGAT
                    A   A
                    A - T
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCGAGTGGGGTAACTTGGATATCCTGAAGGCCTGCGGAGCCTAAGATCCGGGTTCAAA
TCCCGGCCCGGGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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