The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1734
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 276155
End posion on genome 276226
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
atttagcttt
tRNA gene sequence 
GGGCTTGTGGTCTAGTGGTATGACGTCTCCCTCACACGGAGGAGGTCGCCGGTTCGAGCC
CGGCCAGGCCCActt
Downstream region at tRNA end position 
atatttatat
Secondary structure (Cloverleaf model)
>At1734	Val	CAC
                   t      Actt atatttatat
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     T - A
                     G - C          C G
                    T     C G G C C     A
        G A        G      | | | | |     G
      T     T C T G       G C C G G     C
      G       | | |                 T T
      G     T G A C
        T A        G     AGGTC
                    T + G
                    C - G
                    T - A
                    C - G
                    C - G
                  C       C
                  T       A
                    C A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTTGTGGTCTAGTGGTATGACGTCTCCCTCACACGGAGGAGGTCGCCGGTTCGAGCC
CGGCCAGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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