The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1735
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 276477
End posion on genome 276618
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
ctatatgcat
tRNA gene sequence 
GGGAGCATGGGGTAATCAGGCATCCTAGCGGGCTCCAGACCCGTAGATCTGGGTTCAAAT
CCCAGTGCTCCCAtaa
Downstream region at tRNA end position 
cctgaattat
Secondary structure (Cloverleaf model)
>At1735	Trp	CCA
                   t      Ataa cctgaattat
                     G - C
                     G - C
                     G - C
                     A - T
                     G - C
                     C - G
                     A - T          T A
                    T     G A C C C     A
      T A A        G      | | | | |     A
    C       T G G G       C T G G G     C
    A         | | +                 T T
    G       T C C T
      G C A        A     AGAT
                    G + T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGAGCATGGGGTAATCAGGCATCCTAGCGGGCTCCAGtcagtttgtgattagcgagagg
gtcaactgatttcatgatgattgactggaactatgaaacaggaagagACCCGTAGATCTG
GGTTCAAATCCCAGTGCTCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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