The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1736
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 363311
End posion on genome 363383
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position 
ctttttttaa
tRNA gene sequence 
GGGACCGTGGGGTAGCTTGGTATCCTACCAGCTTGGGGTGTTGGTGACTCCGATTCAAAT
TCGGACGGTCCCAttt
Downstream region at tRNA end position 
tattgaatag
Secondary structure (Cloverleaf model)
>At1736	Pro	GGG
                   a      Attt tattgaatag
                     G - C
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     G - C          T A
                    T     A G G C T     A
      C G A        G      | | | | |     A
    T       T G G G       T C C G A     C
    T         | | +                 T T
    G       T C C T
      G T A        A     TGAC
                    C - G
                    C - G
                    A - T
                    G + T
                    C - G
                  T       T
                  T       G
                    G G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGACCGTGGGGTAGCTTGGTATCCTACCAGCTTGGGGTGTTGGTGACTCCGATTCAAAT
TCGGACGGTCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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