The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1737
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 385169
End posion on genome 385241
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
acagaattga
tRNA gene sequence 
GCAGGTGTGGTGTAGCCTGGTAGCACAAAAGCCTTCCAAGCTTTTGACCCGGGTCCAAAT
CCCGGCACCTGCAtag
Downstream region at tRNA end position 
atataaaagt
Secondary structure (Cloverleaf model)
>At1737	Gly	TCC
                   a      Atag atataaaagt
                     G - C
                     C - G
                     A - T
                     G - C
                     G - C
                     T - A
                     G - C          T A
                    T     G G C C C     A
      C G A        G      | | | | |     A
    C       T G T G       C C G G G     C
    T       + | | |                 T C
    G       G C A C
      G T A        A     TGAC
                    A - T
                    A - T
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCAGGTGTGGTGTAGCCTGGTAGCACAAAAGCCTTCCAAGCTTTTGACCCGGGTCCAAAT
CCCGGCACCTGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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