The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1739
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 765849
End posion on genome 765920
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position
atgggctaaa
tRNA gene sequence
GGGCTCGTAGTCTAGTGGTATGATGCCGCCCTTACAAGGCGGTGGTCGCTGGTTCAAATC
CGGCCGGGCCCAttt
Downstream region at tRNA end position
ctataagcaa
Secondary structure (Cloverleaf model)
>At1739	Val	TAC
                   a      Attt ctataagcaa
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     C - G
                     G - C          T A
                    T     C G G C C     A
        G A        A      | | + | |     A
      T     T C T G       G C T G G     C
      G       | | +                 T T
      G     T G A T
        T A        G     TGGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       A
                  T       A
                    T A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCGTAGTCTAGTGGTATGATGCCGCCCTTACAAGGCGGTGGTCGCTGGTTCAAATC
CGGCCGGGCCCA
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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