The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1740
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 811492
End posion on genome 811563
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
atggctatgt
tRNA gene sequence 
GGATAGGTGGCAGAGAGGTCATGCGTGGGACTGCAGATCCCATTTACTAGGGTTCAAATC
CCTACCTATCCTtta
Downstream region at tRNA end position 
tttggaacct
Secondary structure (Cloverleaf model)
>At1740	Cys	GCA
                   t      Ttta tttggaacct
                     G - C
                     G - C
                     A - T
                     T - A
                     A - T
                     G - C
                     G - C          T A
                    T     A T C C C     A
        G A        G      | | | | |     A
      A     G A C G       T A G G G     C
      G       | | |                 T T
      G     A T G C
        T C        G     TTTAC
                    T - A
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGATAGGTGGCAGAGAGGTCATGCGTGGGACTGCAGATCCCATTTACTAGGGTTCAAATC
CCTACCTATCCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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