The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1741
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 835725
End posion on genome 835809
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
tatcctaact
tRNA gene sequence 
GCGAGGATAACTAAGCTTGGCCAAAGGTGCAGGACTTAAGATCCTGTCCCGAAGGGGTTC
GTGGGTTCAAATCCCACTCCTCGCAtta
Downstream region at tRNA end position 
taaaggctca
Secondary structure (Cloverleaf model)
>At1741	Leu	TAA
                   t      Atta taaaggctca
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     A - T          T A
                    T     C A C C C     A
    T C G A        A      | | | | |     A
  T         A T C A       G T G G G     C
  G           + | |                 T T
  G         A G G T
    C C A A        G     TCCCGAAGGGGTTC
                    C - G
                    A - T
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGATAACTAAGCTTGGCCAAAGGTGCAGGACTTAAGATCCTGTCCCGAAGGGGTTC
GTGGGTTCAAATCCCACTCCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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