The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1744
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 904112
End posion on genome 904186
Amino Acid Glu
Anticodon CTC
Upstream region at tRNA start position 
tcactattag
tRNA gene sequence 
GCTCCCGTGGTGTAGTCCGGCCAAGCATTAGGGACTCTCAATCCCCCGACTCGGGTTCAA
ATCCCGACGGGAGCAtta
Downstream region at tRNA end position 
ttgcagattt
Secondary structure (Cloverleaf model)
>At1744	Glu	CTC
                   g      Atta ttgcagattt
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     A G C C C     A
    C T G A        G      | | | | |     A
  C         T G T G       T C G G G     C
  G         + | | +                 T T
  G         G C A T
    C C A A        T     CGAC
                    A   C
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    C T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCCCGTGGTGTAGTCCGGCCAAGCATTAGGGACTCTCAATCCCCCGACTCGGGTTCAA
ATCCCGACGGGAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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