The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1745
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 930670
End posion on genome 930742
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
atggtttaat
tRNA gene sequence 
GCCTCGGTGGTGTAGCGGCCTATCATACAGGCCTGTCGAGCCTGTGACTCGGGTTCAAAT
CCCGGCCGAGGCGaaa
Downstream region at tRNA end position 
aataatcatt
Secondary structure (Cloverleaf model)
>At1745	Asp	GTC
                   t      Gaaa aataatcatt
                     G - C
                     C - G
                     C - G
                     T - A
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        G      + | | | |     A
    G       T G T G       T C G G G     C
    G         | | +                 T T
    C       T C A T
      C T A        A     TGAC
                    C - G
                    A - T
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    G T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTCGGTGGTGTAGCGGCCTATCATACAGGCCTGTCGAGCCTGTGACTCGGGTTCAAAT
CCCGGCCGAGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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