The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1746
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 1018545
End posion on genome 1018617
Amino Acid Arg
Anticodon CCG
Upstream region at tRNA start position 
acaagtcata
tRNA gene sequence 
GGGCCCGTAGTGTAATGGATCATCATATAGGCCTCCGGAGCCTATGATCCGGGTTCGAAT
CCCGGCGGGCTCAaac
Downstream region at tRNA end position 
ccagataaat
Secondary structure (Cloverleaf model)
>At1746	Arg	CCG
                   a      Aaac ccagataaat
                     G - C
                     G + T
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      T A A        A      | | | | |     G
    G       T G T G       C C G G G     C
    G         | | +                 T T
    A       T C A T
      T C A        A     TGAT
                    T - A
                    A - T
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    C C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGTGTAATGGATCATCATATAGGCCTCCGGAGCCTATGATCCGGGTTCGAAT
CCCGGCGGGCTCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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