The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1749
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 95163
End posion on genome 95091
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
aaccaataaa
tRNA gene sequence 
GGGTCTGTGGGGTAGCTTGGAATCCTTCCAGCTTCGGGAGCTGGAAACTCCGGTCCAAAT
CCGGACAGACCCAtag
Downstream region at tRNA end position 
atgttcatgg
Secondary structure (Cloverleaf model)
>At1749	Pro	CGG
                   a      Atag atgttcatgg
                     G - C
                     G - C
                     G - C
                     T - A
                     C - G
                     T - A
                     G - C          T A
                    T     A G G C C     A
      C G A        G      | | | | |     A
    T       T G G G       T C C G G     C
    T         | | +                 T C
    G       T C C T
      G A A        T     AAAC
                    C - G
                    C - G
                    A - T
                    G - C
                    C - G
                  T       A
                  T       G
                    C G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGTCTGTGGGGTAGCTTGGAATCCTTCCAGCTTCGGGAGCTGGAAACTCCGGTCCAAAT
CCGGACAGACCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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